PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA7129
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 336aa    MW: 38153.8 Da    PI: 7.4822
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA7129genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.7e-05171190120
                               EEETTTTEEESSHHHHHHHH CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                               ++Cp C k+F+r  n++ H+
  Tp57577_TGAC_v2_mRNA7129 171 FSCPLCFKTFNRYNNMQMHM 190
                               89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66171198IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-5171190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280173193IPR007087Zinc finger, C2H2
SuperFamilySSF576673.17E-5237275No hitNo description
Gene3DG3DSA:3.30.160.605.2E-4242275IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MSTHPYFSNN FNGYNTYFDL NNPPFYNFPS NYHQNNISFT SSPSSPPQRQ ALPLLNLSPT  60
KHHEDLLLQE SSFSCSSMEI MNMKEKEQQL SISSNSLDDD DAVTVALHLG LPSISSTDLA  120
SSNMYVDSEK DDEKVVTVAS SSSSECPLNK INRGQYWIPT PAQILIGPTQ FSCPLCFKTF  180
NRYNNMQMHM WGHGSQYRKG PESLRGTQPT AMLRLPCYCC APECKNNIDH PRAKPLKDFR  240
TLQTHYKRKH GIKPFMCRKC CKAFAVRGDW RTHEKNCGKL WYCSCGSDFK HKRSLKDHIK  300
AFGNGHKAYG IDECLDQDDE HGGSEIEQEN ESFQS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00197DAPTransfer from AT1G51220Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1614060.0AC161406.8 Medicago truncatula chromosome 2 BAC clone mth2-83p17, complete sequence.
GenBankAC2331770.0AC233177.2 Medicago truncatula strain A17 clone mth2-54k10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304535.11e-166zinc finger protein WIP2-like
SwissprotQ8W0311e-128ZWIP5_ARATH; Zinc finger protein WIP5
SwissprotQ9SVY11e-128ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A151SUK81e-170A0A151SUK8_CAJCA; Protein TRANSPARENT TESTA 1
STRINGGLYMA15G03830.11e-166(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-128C2H2 family protein